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Abstract Number: 2482

Preinflammatory Mesenchymal (PRIME) Cell Signature Genes Enrichment Predicts Treatment Response and Joint Prognosis in Rheumatoid Arthritis

Takayuki Fujii1, Dana Orange2, Caryn Hale2, Koichi Murata1, Hideo Onizawa1, Akira Onishi1, Masao Tanaka3, Akio Morinobu4 and Shuichi Matsuda5, 1Department of Advanced Medicine for Rheumatic Diseases, Graduate School of Medicine, Kyoto University, Kyoto, Japan, 2Rockefeller University, New York, NY, 3Graduate School of Medicine, Kyoto University, Kyoto, Japan, 4Department of Rheumatology and Clinical Immunology, Graduate School of Medicine, Kyoto University, Kyoto, Japan, 5Department of Orthopaedic Surgery, Graduate School of Medicine, Kyoto University, Kyoto, Japan

Meeting: ACR Convergence 2023

Keywords: Bioinformatics, Biologicals, prognostic factors, rheumatoid arthritis

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Session Information

Date: Tuesday, November 14, 2023

Title: Abstracts: RA – Diagnosis, Manifestations, & Outcomes III: Predicting & Optimizing Outcomes

Session Type: Abstract Session

Session Time: 2:00PM-3:30PM

Background/Purpose: This study aimed to determine predictors of treatment response and radiographic progression following the initiation of biological disease-modifying antirheumatic medications (bDMARDs) in patients with rheumatoid arthritis (RA).

Methods: RNAseq was performed on peripheral blood mononuclear cells (PBMCs) taken before and 3 months after bDMARD initiation. Treatment response was defined as good EULAR response (change in DAS28 >1.2 if the DAS28 was >3.2) and radiographic progression was defined as increase in modified total sharp score (mTSS) of more than 0.5, 3.4, or 5.

Results: A total of 41 patients with RA were evaluated (meanage: 63.1 years; 75.6% are females). Radiographic progression was observed 60% of patients and was significantly less common in patients with a good EULAR response. Innate immune pathways, were significantly enriched at baseline in patients without radiographic progression, while genes atypical of immune cells, such as genes related to GO_mesoderm_developement, were upregulated in radiographic progressors, using various thresholds of mTSS change, suggesting enrichment of mesenchymal signature genes. In longitudinal analysis, Preinflammatory mesenchymal (PRIME) cell signature genes showed signifcant enrichment in radiographic progressors and poor treatment responders. In patients with no radiographic progression, innate immune cell, such as neutrophil, monocyte, and platelet, marker genes decreased significantly at 3 months compared to baseline, while they remained unchanged in patients with radiographic progression. On the other hand, in patients with radiographic progression, PRIME cell genes as well as NK and gdT cell genes increased significantly at 3 months compared to baseline, while they remained unchanged in those without radiographic progression (Figure 1).

Conclusion: PBMC innate immune gene signature are increased at baseline and decrease with treatment in patients no radiographic progression. On the other hand, PRIME cell genes are increased at baseline and increase further with treatment in patients with radiographic progression.

Supporting image 1

Gene expression changes after 3 months of treatment compared to baseline in radiographic nonprogressors (RNP; blue) and radiographic progressors (RP; red).


Disclosures: T. Fujii: AbbVie/Abbott, 6, Asahi Kasei Pharma, 6, Chugai Pharma, 6, Janssen, 6, Tanabe Mitsubishi Pharma, 6; D. Orange: Rockefeller University, 10; C. Hale: None; K. Murata: None; H. Onizawa: None; A. Onishi: None; M. Tanaka: AbbVie GK, 6, Asahi Kasei Pharma Corp., 5, Astellas Pharma Inc., 6, Ayumi Pharmaceutical Corp., 5, Chugai Pharmaceutical Co., Ltd., 6, Eisai Co., Ltd., 6, Eli Lilly Japan K.K., 6, Kyowa Kirin Co., Ltd., 5, Pfizer Inc., 6, Taisho Pharmaceutical Co., Ltd., 5, Tanabe Mitsubishi Pharma Corp., 6, Teijin Pharma, Ltd., 6, UCB Japan Co., Ltd., 6; A. Morinobu: None; S. Matsuda: None.

To cite this abstract in AMA style:

Fujii T, Orange D, Hale C, Murata K, Onizawa H, Onishi A, Tanaka M, Morinobu A, Matsuda S. Preinflammatory Mesenchymal (PRIME) Cell Signature Genes Enrichment Predicts Treatment Response and Joint Prognosis in Rheumatoid Arthritis [abstract]. Arthritis Rheumatol. 2023; 75 (suppl 9). https://acrabstracts.org/abstract/preinflammatory-mesenchymal-prime-cell-signature-genes-enrichment-predicts-treatment-response-and-joint-prognosis-in-rheumatoid-arthritis/. Accessed .
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