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Abstract Number: L16

Breakthrough COVID-19 Infections Post-vaccination Among Immunocompromised Patients with Autoimmune or Inflammatory Rheumatic Diseases: A Retrospective Cohort Analysis from a U.S. Nationally-sampled Electronic Medical Record Data Repository

Jasvinder Singh1, Namrata Singh2, Alfred Anzalone3, Amy Olex4, Jing Sun5, Vithal Madhira6 and Rena Patel7, 1University of Alabama at Birmingham, Birmingham, AL, 2University of Washington, Bellevue, WA, 3University of Nebraska, Omaha, NE, 4Virginia Commonwealth University, Richmond, VA, 5Johns Hopkins University, Baltimore, MD, 6Palila Software, Reno, NV, 7Unviersity of Washington, Seattle, WA

Meeting: ACR Convergence 2021

Date of first publication: October 22, 2021

Keywords: Administrative Data, autoimmune diseases, COVID-19, Infection, Late-Breaking 2021, risk assessment

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Session Information

Date: Tuesday, November 9, 2021

Title: Late-Breaking Abstracts (L16 - L21)

Session Type: Late-Breaking Abstract Session

Session Time: 10:30AM-10:45AM

Background/Purpose: National U.S. data on breakthrough COVID-19 infection in people with autoimmune or inflammatory rheumatic diseases (AIRD) are limited. Our objective was to assess whether breakthrough COVID-19 infections were increased post-COVID-19-vaccination among patients with various AIRD using a nationally sampled cohort.

Methods: We used U.S. National COVID Cohort Collaborative (N3C), the largest U.S. cohort of COVID-19 cases and controls that started in January 2020. We identified diagnoses of autoimmune or inflammatory rheumatic diseases based on one or more International Classification of Diseases (ICD)-10 codes for the following conditions through September 23, 2021: Rheumatoid Arthritis (RA); Spondyloarthritis (SpA); Gout; Systemic Lupus Erythematosus (SLE); Systemic Sclerosis (SSc); Polymyositis; Polymyalgia rheumatica (PMR); rheumatoid lung; the comparator group was people without rheumatic conditions (without-AIRD; no-rheumatic disease [RD]). Our primary outcome was breakthrough COVID-19 infections 14 days or later after full or partial COVID-19 vaccination (full vaccination defined as 2 doses of an mRNA vaccine or one dose of Janssen vaccine), as well as by the manufacturer of vaccine (i.e., Pfizer, Moderna, or Janssen). We performed unadjusted and multivariable-adjusted logistic regression analyses adjusted for age, gender, race/ethnicity, Quan-Charlson Comorbidity Index, and data partner to examine the odds of breakthrough COVID-19 infection compared to the absence of each condition.

Results: A total of 584,257 patients met our eligibility criteria, of which 536,954 were people without AIRD (no-RD) and 47,303 had at least one of the AIRDs. Median (IQR) age was 50 and 66 years and 57% and 52% were female for no-RD and AIRD patients, respectively (Table 1). Prevalence of breakthrough COVID-19 infections/1,000 persons after full vaccination were as follows for without-AIRD vs. AIRD respectively: (1) Pfizer: 19 vs. 36; (2) Moderna, 16 vs. 33; and (3) Janssen, 26 vs. 47 (Table 2). The prevalence for partial vaccination followed similar patterns but were higher overall as compared to full vaccination. In those fully vaccinated, compared to people without each condition, the adjusted odds of breakthrough COVID-19 infections were increased significantly for RA, SpA, SLE, SSc, Polymyositis, but not for gout, PMR, or rheumatoid lung (Table 3): OR ranged from 1.2 (95% CI 1.1, 1.3) for SpA to 2.3 (95% CI 1.4, 3.5) for polymyositis. A similar pattern was seen after partial vaccination.

Conclusion: Patients with AIRDs appear to have an increased odds of breakthrough COVID-19 infections compared to patients without rheumatic disease. Further, the breakthrough COVID-19 infection risk varies by the type of AIRD. We will next examine the contribution of various drug exposures potentially influencing the higher risk of breakthrough infection among those with AIRDs. These results support the recent recommendations for COVID-19 booster in people with AIRD.

Table 1. Clinical and Demographic Characteristics

Table 2. Breakthrough infections 14 days or later after partial or full vaccination by the type of Vaccine

Table 3. Unadjusted and Adjusted odds of breakthrough infections


J. Singh, Crealta/Horizon, Medisys, Fidia, PK Med, 2, Two labs Inc., Adept Field Solutions, Clinical Care options, Clearview healthcare partners, 2, Putnam associates, Focus forward, Navigant consulting, 2, Spherix, MedIQ, Jupiter Life Science, UBM LLC, Trio Health, Medscape, WebMD, and Practice Point communications, 2, TPT Global Tech, Vaxart pharmaceuticals and Charlotte’s Web Holdings, 8, Amarin, Viking and Moderna pharmaceuticals, 8, Simply Speaking, 6; N. Singh, None; A. Anzalone, None; A. Olex, None; J. Sun, None; V. Madhira, None; R. Patel, None.

To cite this abstract in AMA style:

Singh J, Singh N, Anzalone A, Olex A, Sun J, Madhira V, Patel R. Breakthrough COVID-19 Infections Post-vaccination Among Immunocompromised Patients with Autoimmune or Inflammatory Rheumatic Diseases: A Retrospective Cohort Analysis from a U.S. Nationally-sampled Electronic Medical Record Data Repository [abstract]. Arthritis Rheumatol. 2021; 73 (suppl 9). https://acrabstracts.org/abstract/breakthrough-covid-19-infections-post-vaccination-among-immunocompromised-patients-with-autoimmune-or-inflammatory-rheumatic-diseases-a-retrospective-cohort-analysis-from-a-u-s-nationally-sampled-el/. Accessed .
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